PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009308-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 89aa    MW: 10074.6 Da    PI: 11.3088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009308-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.9e-073875955
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   E rRRd++ + f  L  ++P           Ka++L  A++Y+k+Lq
  NNU_009308-RA 38 E-RRRDKLSQHFIALSAIVPGF--------KKASVLGDAIKYLKQLQ 75
                   4.699****************6........4***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-113385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-73479No hitNo description
Gene3DG3DSA:4.10.280.104.8E-113486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-93580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-53975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MPFPSHVSDQ NYVSKPGHGT KRVNPATTRP AQDHVIAERR RDKLSQHFIA LSAIVPGFKK  60
ASVLGDAIKY LKQLQQRVRT LKERAEKKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271548.12e-34PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0721e-18BH025_ARATH; Transcription factor bHLH25
TrEMBLA5ATH72e-27A5ATH7_VITVI; Putative uncharacterized protein
STRINGVIT_03s0088g01240.t012e-26(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-20bHLH family protein